>>>> ConvertNCBI <<<< Parameters: Project directory: convert/ncbi/riceA Processing convert/ncbi/riceA/GCF_001433935.1_IRGSP-1.0_genomic.fna.gz Chr01 NC_029256.1 43,270,923 Chr02 NC_029257.1 35,937,250 Chr03 NC_029258.1 36,413,819 Chr04 NC_029259.1 35,502,694 Chr05 NC_029260.1 29,958,434 Chr06 NC_029261.1 31,248,787 Chr07 NC_029262.1 29,697,621 Chr08 NC_029263.1 28,443,022 Chr09 NC_029264.1 23,012,720 Chr10 NC_029265.1 23,207,287 Chr11 NC_029266.1 29,021,106 Chr12 NC_029267.1 27,531,856 Finish writing /genomic.fna A 70,636,261 a 34,654,605 T 70,620,653 t 34,667,277 C 55,453,781 c 25,809,171 G 55,467,411 g 25,819,706 N 116,654 n 0 Gaps >= 30000: 0 Processing convert/ncbi/riceA/GCF_001433935.1_IRGSP-1.0_genomic.gff.gz Use Genes 28,556 from 33,624 Process mRNA.... First mRNAs 28,556 from 42,417 Process exons.... Write Exons 153,923 from 333,815 Finish writing /anno.gff >>Sequence 12 Chromosomes of 373,245,519 total length 43 Scaffolds of 550,136 total length (12<10,000bp) -- not written to file 3 Other of 627,180 total length -- not written to file >>All Types (col 3) CDS 238,915 cDNA_match 1,507 exon 333,815 * gene 33,624 * intron 1 inverted_repeat 2 lnc_RNA 6,277 mRNA 42,417 * pseudogene 1,605 pseudogenic_tRNA 3 rRNA 200 region 58 sequence_feature 489 snRNA 71 snoRNA 610 tRNA 672 transcript 3,840 >>All Gene Source (col 2) Gnomon 31,900 * RefSeq 235 * cmsearch 874 * tRNAscan-SE 615 * >>All gene_biotype= lncRNA 3,270 misc_RNA 57 protein_coding 28,744 * rRNA 200 snRNA 71 snoRNA 610 tRNA 672 >>Gene product= Unique 28,556 Variants 13,836 >>Written to file Gene 28,556 mRNA 28,556 Exon 153,923 >>Chromosome gene count 28,556 Chr01 NC_029256.1 3,969 Chr02 NC_029257.1 3,176 Chr03 NC_029258.1 3,447 Chr04 NC_029259.1 2,525 Chr05 NC_029260.1 2,270 Chr06 NC_029261.1 2,337 Chr07 NC_029262.1 2,267 Chr08 NC_029263.1 1,941 Chr09 NC_029264.1 1,603 Chr10 NC_029265.1 1,562 Chr11 NC_029266.1 1,813 Chr12 NC_029267.1 1,646 Genes not on Chromosome 188 ConvertNCBI completed