>>>> ConvertNCBI <<<<
Parameters:
Project directory: convert/ncbi/riceB

Processing fasta files
Chr01       NC_029256.1           43,270,923
Chr02       NC_029265.1           23,207,287
Chr03       NC_029266.1           29,021,106
Chr04       NC_029267.1           27,531,856
Chr05       NC_029257.1           35,937,250
Chr06       NC_029258.1           36,413,819
Chr07       NC_029259.1           35,502,694
Chr08       NC_029260.1           29,958,434
Chr09       NC_029261.1           31,248,787
Chr10       NC_029262.1           29,697,621
Chr11       NC_029263.1           28,443,022
Chr12       NC_029264.1           23,012,720
Finish writing /genomic.fna
A 105,290,866  a           0
T 105,287,930  t           0
C  81,262,952  c           0
G  81,287,117  g           0
N     116,654  n           0
Gaps >= 30000: 0

Processing convert/ncbi/riceB/ncbi_dataset/data/GCF_001433935.1/genomic.gff
   Use Genes 28,556 from 33,624
Process mRNA....
   First mRNAs 28,556 from 42,417
Process exons....
   Write Exons 153,923  from 333,815
Finish writing /anno.gff

>>Sequence
     12 Chromosomes of     373,245,519 total length
     43 Scaffolds   of         550,136 total length (12<10,000bp) -- not written to file
      3 Other       of         627,180 total length -- not written to file

>>All Types  (col 3)
   CDS                     238,915
   cDNA_match                1,507
   exon                    333,815 *
   gene                     33,624 *
   intron                        1
   inverted_repeat               2
   lnc_RNA                   6,277
   mRNA                     42,417 *
   pseudogene                1,605
   pseudogenic_tRNA              3
   rRNA                        200
   region                       58
   sequence_feature            489
   snRNA                        71
   snoRNA                      610
   tRNA                        672
   transcript                3,840
>>All Gene Source (col 2)
   Gnomon                   31,900 *
   RefSeq                      235 *
   cmsearch                    874 *
   tRNAscan-SE                 615 *
>>All gene_biotype=
   lncRNA                    3,270
   misc_RNA                     57
   protein_coding           28,744 *
   rRNA                        200
   snRNA                        71
   snoRNA                      610
   tRNA                        672
>>Gene product=
   Unique                 28,556
   Variants               13,836
>>Written to file
   Gene                   28,556
   mRNA                   28,556
   Exon                  153,923
>>Chromosome gene count 28,556
   Chr01      NC_029256.1             3,969
   Chr02      NC_029265.1             1,562
   Chr03      NC_029266.1             1,813
   Chr04      NC_029267.1             1,646
   Chr05      NC_029257.1             3,176
   Chr06      NC_029258.1             3,447
   Chr07      NC_029259.1             2,525
   Chr08      NC_029260.1             2,270
   Chr09      NC_029261.1             2,337
   Chr10      NC_029262.1             2,267
   Chr11      NC_029263.1             1,941
   Chr12      NC_029264.1             1,603
   Genes not on Chromosome      188
ConvertNCBI completed