ext/mummer/mac/promer  -p data/seq_results/demo_seq_to_demo_seq2/align/results.promer data/seq/demo_seq2/sequence/chr1.seq data/seq/demo_seq/sequence/genomic.fa
ext/mummer/mac/show-coords -dlkTH data/seq_results/demo_seq_to_demo_seq2/align/results.promer.delta >data/seq_results/demo_seq_to_demo_seq2/align/seq1chr1.mum
ext/mummer/mac/promer  -p data/seq_results/demo_seq_to_demo_seq2/align/results.promer data/seq/demo_seq2/sequence/chr3.seq data/seq/demo_seq/sequence/genomic.fa
ext/mummer/mac/show-coords -dlkTH data/seq_results/demo_seq_to_demo_seq2/align/results.promer.delta >data/seq_results/demo_seq_to_demo_seq2/align/seq1chr3.mum