AGCoL SyMAP - Synteny Mapping and Analysis Program UA
BIO5
SyMAP Home | Download | Docs | System Guide | User Guide | Tour
SyMAP (Synteny Mapping and Analysis Program) is a software package for detecting, displaying, and querying syntenic relationships between sequenced genomes.

 It is designed for medium-to-high divergent eukaryotic genomes (not bacteria).
 It can align a draft genome to a fully sequenced genome (see Peach), but not draft-to-draft.

 Latest SyMAP release: v5.2.1 (1-Dec-2022), see Release Notes.

Download
  symap_5.tar.gz
  - executable and demo files
 
Documentation
  Index of Docs
  System Guide - Build synteny
  User Guide - View synteny
  SyMAP Tour
 
Also see
  TCW: Comparative transcriptomes
Click an image to see the closeup.
symapRosid 2d-3chr
dotplot-3g circle-two-genome
This project was partially supported by the National Research Initiative of USDA's National Institute of Food and Agriculture, grant #0214643.
All upgrades starting with release 7-Nov-2016 have been developed by CAS without funding.

References

C. Soderlund, M. Bomhoff, and W. Nelson (2011) SyMAP v3.4: a turnkey synteny system with application to plant genomes Nucleic Acids Research 39(10):e68 Link

C. Soderlund, W. Nelson, A. Shoemaker and A. Paterson (2006) SyMAP: A system for discovering and viewing syntenic regions of FPC maps. Genome Research 16:1159-1168. Link

Email Comments To: symap@agcol.arizona.edu